About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38531077_38533957_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38531077 - 38533957
Intron Length:
2881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCTATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAGGTAATAATT
Flanking Amino Acid:
RFIERELGVPAVGGAVTETT
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
80
0.75
1
78.6
31
Major PPT
74.4
0.55
0.9
70.1
35.5
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
45.7
-0.2
1.9
62.64
41.7

Associated Gene:

Gene:
ADSS2
Ensembl Gene ID:
ENSAPLG00000011820
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012361
38498556 - 38534028
35473