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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38536727_38537398_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38536727 - 38537398
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
GCTTCTTGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
TATTACAGAATG
Flanking Amino Acid:
HQAQTSRGAPGPFSKLQPAP
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
60.6
46.7
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
68
0.4
0.9
61.3
40.1
Minor 5ss
42.8
-0.8
2.9
47.3
48.1
Minor BPS
48.1
-0.2
1.9
60.06
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011818
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012289
38533616 - 38537547
3932