Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38637178_38639302_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38637178 - 38639302

Intron Length:

2125

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAGTA

5'SS Class:

strong_major

3'SS Sequence:

TCGTTGCTTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

AATTTTTTAAAA

Flanking Amino Acid:

MCTKGYEDSMEFPD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

75.2

35.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

74.8

0.56

0.9

68.8

37.3

Minor 5ss

32.6

-2

3.7

46.4

48.9

Minor BPS

67.4

0.54

1.3

71.85

33.4

Associated Gene:

Gene:

ZBTB18

Ensembl Gene ID:

ENSAPLG00000002367

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021485

38635918 - 38640093

4176

ENSAPLT00000002370

38635595 - 38640093

4499