Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38644713_38649313_R

Intron Information:

Intron Rank:

144262

Intron Class:

major

Intron Phase:

Intron Coordinates:

38644713 - 38649313

Intron Length:

4601

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAAGG

5'SS Class:

strong_major

3'SS Sequence:

TGCATTTCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAG

U12 Branch Point Sequence:

TACTCCATGACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.8

75.5

40.6

Major BPS

60.1

0.25

1.6

60.7

45.9

Major PPT

69.4

0.44

0.9

61.9

39.8

Minor 5ss

32.9

-2

2.9

40.4

45.3

Minor BPS

67.1

0.62

1.6

81.42

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024875

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026987

38644425 - 38650136

5712