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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38662673_38662969_F

Intron Information:

Intron Rank:
132270
Intron Class:
major
Intron Phase:
Intron Coordinates:
38662673 - 38662969
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTTCTGATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
80.9
0.7
0.9
82.2
34.2
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
65.4
0.48
1.7
79.93
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021059
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026723
38662206 - 38663776
1571