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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38664142_38677527_F

Intron Information:

Intron Rank:
138608
Intron Class:
major
Intron Phase:
Intron Coordinates:
38664142 - 38677527
Intron Length:
13386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTGCACTCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
ATCTGACTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
82.1
31
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
76.3
0.59
0.9
69.2
36.7
Minor 5ss
31.4
-2.1
3.2
42.1
45
Minor BPS
47.5
-0.1
2.3
72.35
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024614
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039566
38663989 - 38678772
14784