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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38677613_38678717_F

Intron Information:

Intron Rank:
138609
Intron Class:
major
Intron Phase:
Intron Coordinates:
38677613 - 38678717
Intron Length:
1105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTACGTATG
5'SS Class:
major
3'SS Sequence:
TATCTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATGCTCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
67
44.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
83.3
0.75
0.8
77.7
30.7
Minor 5ss
40.5
-1.1
3
56.3
42
Minor BPS
61
0.42
1.6
75.43
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024614
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039566
38663989 - 38678772
14784