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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38722097_38788276_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38722097 - 38788276
Intron Length:
66180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
IVKEGWVQKRGEYIKNWRPR
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
33.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
85.8
0.81
0.6
85.1
22.4
Minor 5ss
42.4
-0.8
2.8
51.5
44.9
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
AKT3
Ensembl Gene ID:
ENSAPLG00000011477
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011990
38721942 - 38859638
137697