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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38788403_38801650_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38788403 - 38801650
Intron Length:
13248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
ATGTCATGTATT
Flanking Amino Acid:
PYPLNNFSVAKCQLMKTERP
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
86.3
29
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
78
0.63
0.9
70.3
41.2
Minor 5ss
49.5
-0
2.5
68.8
35.6
Minor BPS
47.2
-0.1
2
68.44
42.5

Associated Gene:

Gene:
AKT3
Ensembl Gene ID:
ENSAPLG00000011477
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011990
38721942 - 38859638
137697