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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38803381_38812003_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38803381 - 38812003
Intron Length:
8623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAACC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
TGCTCCTTATAG
Flanking Amino Acid:
DASTTHHKRKTMNDFDYLKL
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.4
33.9
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
78.7
0.65
0.8
73.2
31.8
Minor 5ss
34.8
-1.7
2.9
45
42.5
Minor BPS
56.5
0.07
1.8
61.46
45.9

Associated Gene:

Gene:
AKT3
Ensembl Gene ID:
ENSAPLG00000011477
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011990
38721942 - 38859638
137697