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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38824305_38825973_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
38824305 - 38825973
Intron Length:
1669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCCCGACACACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTTAA
U12 Branch Point Sequence:
TTTTCCCCGACA
Flanking Amino Acid:
SGKIVYRDLKLENLMLDKDG
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
69.9
0.49
1
61.3
37
Major PPT
57.4
0.17
0.9
49.3
32.1
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
61.7
0.36
1.9
80.14
35.3

Associated Gene:

Gene:
AKT3
Ensembl Gene ID:
ENSAPLG00000011477
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011990
38721942 - 38859638
137697