Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38864336_38868909_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

38864336 - 38868909

Intron Length:

4574

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTAGGTATT

5'SS Class:

major

3'SS Sequence:

TTCTGTCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTTAC

U12 Branch Point Sequence:

ACTTACTTACAC

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.8

0.7

84.6

33.2

Major BPS

73.7

0.59

0.9

63.6

35.1

Major PPT

86.9

0.83

0.7

84.6

30.4

Minor 5ss

-0.9

3.2

59.7

39.1

Minor BPS

50.1

-0

1.9

63.02

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011088

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033852

38863976 - 38972542

108567

ENSAPLT00000011562

38863976 - 38969000

105025

ENSAPLT00000048051

38863976 - 38972542

108567

ENSAPLT00000046618

38863976 - 38972542

108567

ENSAPLT00000041402

38863976 - 38972542

108567