Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38868993_38870868_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38868993 - 38870868

Intron Length:

1876

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGTGC

5'SS Class:

major

3'SS Sequence:

TTGCATATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTGCAT

U12 Branch Point Sequence:

AACTCTGCAATT

Flanking Amino Acid:

TEEVQFLRIQEKKWDADLKQ

Intron Amino Acid Position:

842

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.8

0.44

1.1

57.8

42.2

Major BPS

66.2

0.4

1.4

77.4

37.3

Major PPT

77.5

0.62

0.9

74.2

39.9

Minor 5ss

36.1

-1.6

3.4

50.8

45.8

Minor BPS

46.2

-0.2

2.1

63.26

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011088

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033852

38863976 - 38972542

108567