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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38870193_38870868_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38870193 - 38870868
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTGC
5'SS Class:
major
3'SS Sequence:
CCATTTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCCCTTTCATC
Flanking Amino Acid:
TEEVQFLRIQKKEEEREIEK
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
57.8
42.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
78.7
0.65
0.9
76.1
37.6
Minor 5ss
36.1
-1.6
3.4
50.8
45.8
Minor BPS
56.1
0.17
1.7
67.01
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041402
38863976 - 38972542
108567
ENSAPLT00000011562
38863976 - 38969000
105025
ENSAPLT00000048051
38863976 - 38972542
108567
ENSAPLT00000046618
38863976 - 38972542
108567