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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38870996_38904742_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38870996 - 38904742
Intron Length:
33747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTCTTTTTATCT
Flanking Amino Acid:
HGRMHERMKSRLHQLDKHCQ
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
69.9
41.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.8
0.94
0.7
84.8
35.4
Minor 5ss
30.8
-2.2
3.7
47.1
48.3
Minor BPS
60.7
0.41
1.6
74.38
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046618
38863976 - 38972542
108567
ENSAPLT00000041402
38863976 - 38972542
108567
ENSAPLT00000033852
38863976 - 38972542
108567
ENSAPLT00000011562
38863976 - 38969000
105025
ENSAPLT00000048051
38863976 - 38972542
108567