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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38877759_38904742_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38877759 - 38904742
Intron Length:
26984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTGGCTAAACA
Flanking Amino Acid:
HGRMHERMKSREVGNATETS
Intron Amino Acid Position:
782

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
69.9
41.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.4
0.75
0.9
80.8
36.5
Minor 5ss
30.8
-2.2
3.7
47.1
48.3
Minor BPS
49.7
-0
2.2
66.36
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043160
38877286 - 38972542
95257