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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38904875_38910892_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38904875 - 38910892
Intron Length:
6018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
TGTGTTTTACTT
Flanking Amino Acid:
RKLEQISEKYRSEVNQLSQE
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
1
88.3
26.6
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
82.2
0.72
0.7
77.9
30.7
Minor 5ss
35.7
-1.6
2.6
43.1
43.8
Minor BPS
53.7
0.19
1.7
71.21
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033852
38863976 - 38972542
108567
ENSAPLT00000048051
38863976 - 38972542
108567
ENSAPLT00000011562
38863976 - 38969000
105025
ENSAPLT00000046618
38863976 - 38972542
108567
ENSAPLT00000043160
38877286 - 38972542
95257
ENSAPLT00000041402
38863976 - 38972542
108567