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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38913240_38932430_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
38913240 - 38932430
Intron Length:
19191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCCTT
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGATTTTTATTT
Flanking Amino Acid:
SKSEHQLHLTRLEKESIQHS
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.4
1.3
63.8
47.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.7
0.85
0.7
84.2
30.9
Minor 5ss
48.3
-0.2
3.2
74.1
42.2
Minor BPS
58.8
0.35
1.5
72.71
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033852
38863976 - 38972542
108567
ENSAPLT00000048051
38863976 - 38972542
108567
ENSAPLT00000011562
38863976 - 38969000
105025
ENSAPLT00000046618
38863976 - 38972542
108567
ENSAPLT00000043160
38877286 - 38972542
95257
ENSAPLT00000041402
38863976 - 38972542
108567