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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38932574_38944165_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38932574 - 38944165
Intron Length:
11592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
AAATTTTTCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGGTTCTAAATT
Flanking Amino Acid:
TIRELEIKDQKIEKLGLELN
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
64.7
0.33
1.1
68.4
41.3
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
62.2
0.46
1.7
75.75
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043160
38877286 - 38972542
95257
ENSAPLT00000041402
38863976 - 38972542
108567
ENSAPLT00000033852
38863976 - 38972542
108567
ENSAPLT00000011562
38863976 - 38969000
105025
ENSAPLT00000048051
38863976 - 38972542
108567