About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38944283_38946442_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38944283 - 38946442
Intron Length:
2160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TATAATCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TATAATCTAACA
Flanking Amino Acid:
SHPWRELRKEVCGEMRYQLN
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
69.1
0.43
1
62.9
42.4
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
50.7
0.02
1.9
67.47
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041402
38863976 - 38972542
108567
ENSAPLT00000033852
38863976 - 38972542
108567