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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38944283_38947630_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38944283 - 38947630
Intron Length:
3348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
TATAATCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TATAATCTAACA
Flanking Amino Acid:
LASHETEMNKVCGEMRYQLN
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
69.1
0.43
1
62.9
42.4
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
50.7
0.02
1.9
67.47
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043160
38877286 - 38972542
95257
ENSAPLT00000011562
38863976 - 38969000
105025
ENSAPLT00000048051
38863976 - 38972542
108567