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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38953583_38955225_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38953583 - 38955225
Intron Length:
1643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTTTG
5'SS Class:
major
3'SS Sequence:
TCTTTATATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CTTTCTTTATAT
Flanking Amino Acid:
VHVQIIERVTKERDDLMDAL
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.7
39.6
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
82.2
0.72
0.9
77.2
35.2
Minor 5ss
44.5
-0.6
3
57.8
41.2
Minor BPS
63.9
0.52
1.7
80.79
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011562
38863976 - 38969000
105025
ENSAPLT00000046618
38863976 - 38972542
108567
ENSAPLT00000043160
38877286 - 38972542
95257
ENSAPLT00000041402
38863976 - 38972542
108567
ENSAPLT00000033852
38863976 - 38972542
108567
ENSAPLT00000048051
38863976 - 38972542
108567