About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38955415_38957619_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38955415 - 38957619
Intron Length:
2205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TATTGCTGAAAT
Flanking Amino Acid:
NILDAQVKSLRKDLSESQKT
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
84.7
0.78
0.8
77.7
36.7
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
57.9
0.33
2
79.84
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011562
38863976 - 38969000
105025
ENSAPLT00000046618
38863976 - 38972542
108567
ENSAPLT00000043160
38877286 - 38972542
95257
ENSAPLT00000041402
38863976 - 38972542
108567
ENSAPLT00000033852
38863976 - 38972542
108567
ENSAPLT00000048051
38863976 - 38972542
108567