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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38960107_38964934_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
38960107 - 38964934
Intron Length:
4828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
TTACTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TATTCTTTACTT
Flanking Amino Acid:
SPSRRKMLFCKPPEAADEDL
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.43
1.1
67.9
38.2
Major BPS
74
0.6
1
65.6
41.1
Major PPT
82.8
0.74
0.8
77
31.5
Minor 5ss
60
0.34
2.2
70.5
40.1
Minor BPS
70.8
0.73
1.5
84.68
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033852
38863976 - 38972542
108567
ENSAPLT00000048051
38863976 - 38972542
108567
ENSAPLT00000011562
38863976 - 38969000
105025
ENSAPLT00000046618
38863976 - 38972542
108567
ENSAPLT00000043160
38877286 - 38972542
95257
ENSAPLT00000041402
38863976 - 38972542
108567