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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38965294_38968912_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38965294 - 38968912
Intron Length:
3619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
RIGKCSVFPTERANESIHQL
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
76.4
32.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.6
0.82
0.7
81.9
28.5
Minor 5ss
28.3
-2.5
3.6
40.1
46.3
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011562
38863976 - 38969000
105025