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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_38999606_39008770_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38999606 - 39008770
Intron Length:
9165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTATTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTTATT
Flanking Amino Acid:
LVKDLGSLNGTFVNDVRIPE
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.9
32.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
78.4
0.64
0.8
70.3
40
Minor 5ss
36.8
-1.5
3
39
46.2
Minor BPS
61.4
0.44
1.9
81.12
40.6

Associated Gene:

Gene:
CEP170
Ensembl Gene ID:
ENSAPLG00000010551
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023678
38994129 - 39068728
74600
ENSAPLT00000019365
38994129 - 39068728
74600
ENSAPLT00000011040
38994129 - 39068728
74600
ENSAPLT00000048079
38994129 - 39068835
74707
ENSAPLT00000038358
38994129 - 39068835
74707