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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39009530_39009633_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39009530 - 39009633
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATG
5'SS Class:
strong_major
3'SS Sequence:
TAATGTTACATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATG
Flanking Amino Acid:
EMRVPEEALKHEKFTSQLQL
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
77.4
37.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
63.5
0.3
1
58.3
41.8
Minor 5ss
37.2
-1.5
3
49.1
46.7
Minor BPS
67.4
0.41
1.5
70.58
36.8

Associated Gene:

Gene:
CEP170
Ensembl Gene ID:
ENSAPLG00000010551
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011040
38994129 - 39068728
74600
ENSAPLT00000048079
38994129 - 39068835
74707
ENSAPLT00000038358
38994129 - 39068835
74707
ENSAPLT00000023678
38994129 - 39068728
74600
ENSAPLT00000019365
38994129 - 39068728
74600