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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39020653_39023114_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39020653 - 39023114
Intron Length:
2462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
GCTTTGATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTGCTTTGATT
Flanking Amino Acid:
DVPVYLKRLKGNKHDDGTQS
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
72.5
0.51
0.9
66.4
39.5
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
72.8
0.8
1.3
86.34
34.1

Associated Gene:

Gene:
CEP170
Ensembl Gene ID:
ENSAPLG00000010551
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038358
38994129 - 39068835
74707
ENSAPLT00000019365
38994129 - 39068728
74600
ENSAPLT00000011040
38994129 - 39068728
74600
ENSAPLT00000048079
38994129 - 39068835
74707