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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39023282_39023359_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39023282 - 39023359
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
CTCTTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
ACGTTCTTACTC
Flanking Amino Acid:
STEKQQEQAGNVGALCPESP
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
57.9
42.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
87.7
0.85
0.6
87.2
23.3
Minor 5ss
30.1
-2.3
2.9
33
41.8
Minor BPS
54.7
0.13
1.6
59.38
40.7

Associated Gene:

Gene:
CEP170
Ensembl Gene ID:
ENSAPLG00000010551
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048079
38994129 - 39068835
74707
ENSAPLT00000038358
38994129 - 39068835
74707
ENSAPLT00000011040
38994129 - 39068728
74600