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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39056344_39057806_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39056344 - 39057806
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTCCTTTATT
Flanking Amino Acid:
PGSAIDTREELVDRVFDESL
Intron Amino Acid Position:
1402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
85.3
0.79
0.8
77.2
36.7
Minor 5ss
30.7
-2.2
3.7
46.1
49.1
Minor BPS
81.6
1.08
1.4
96.2
29.4

Associated Gene:

Gene:
CEP170
Ensembl Gene ID:
ENSAPLG00000010551
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023678
38994129 - 39068728
74600
ENSAPLT00000011040
38994129 - 39068728
74600
ENSAPLT00000048079
38994129 - 39068835
74707
ENSAPLT00000038358
38994129 - 39068835
74707