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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39058338_39063346_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39058338 - 39063346
Intron Length:
5009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTTTTT
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TCTACTTTAAAC
Flanking Amino Acid:
QSIDKTAGKIRILFKDQDRN
Intron Amino Acid Position:
1487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
34.7
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
83.1
0.74
0.8
76.8
37.4
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
67.1
0.52
1.4
72.22
38.8

Associated Gene:

Gene:
CEP170
Ensembl Gene ID:
ENSAPLG00000010551
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038358
38994129 - 39068835
74707
ENSAPLT00000023678
38994129 - 39068728
74600
ENSAPLT00000019365
38994129 - 39068728
74600
ENSAPLT00000011040
38994129 - 39068728
74600
ENSAPLT00000048079
38994129 - 39068835
74707