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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39072018_39073515_R

Intron Information:

Intron Rank:
139874
Intron Class:
major
Intron Phase:
Intron Coordinates:
39072018 - 39073515
Intron Length:
1498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TCTCATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
74.9
0.56
0.9
68.6
37.3
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
57
0.21
1.6
67.09
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022640
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043142
39071699 - 39074105
2407
ENSAPLT00000041335
39070710 - 39074105
3396