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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39163231_39164584_F

Intron Information:

Intron Rank:
143292
Intron Class:
major
Intron Phase:
Intron Coordinates:
39163231 - 39164584
Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
GTGTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTAGGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.2
30.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.5
0.82
0.8
84.6
36
Minor 5ss
30
-2.3
3.1
37.1
40.4
Minor BPS
49.6
0.05
2.1
75.15
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027188
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019808
39162117 - 39164715
2599