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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39264466_39305538_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39264466 - 39305538
Intron Length:
41073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TAATCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTAATCTTAATC
Flanking Amino Acid:
GWGRHITVVYSQQRCIVIFA
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.9
0.7
0.9
77.9
35.9
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
72.5
0.68
1.2
75.66
34.4

Associated Gene:

Gene:
PLD5
Ensembl Gene ID:
ENSAPLG00000015142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015780
39264361 - 39411447
147087