Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39339573_39346795_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39339573 - 39346795

Intron Length:

7223

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTTCT

5'SS Class:

strong_major

3'SS Sequence:

CTATTTTTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

CTTTCCTTTACT

Flanking Amino Acid:

LNHSHPSACQGQRLFEKLLE

Intron Amino Acid Position:

138

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.92

0.8

83.2

29.4

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

0.65

0.8

37.1

Minor 5ss

48.9

-0.1

2.4

68.1

42.9

Minor BPS

79.5

1.01

1.5

92.33

36.7

Associated Gene:

Gene:

PLD5

Ensembl Gene ID:

ENSAPLG00000015142

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037359

39272308 - 39411447

139140

ENSAPLT00000015784

39271573 - 39411447

139875

ENSAPLT00000015780

39264361 - 39411447

147087