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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39346911_39374475_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39346911 - 39374475
Intron Length:
27565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGACCA
5'SS Class:
major
3'SS Sequence:
TGTAAATCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTGTCTGTAAAT
Flanking Amino Acid:
SKVLNDLKTKGAEVLYMNMS
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.3
40.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
66.2
0.37
1
56.1
44.4
Minor 5ss
31.8
-2.1
3
32.6
41.5
Minor BPS
52.8
0.17
2.1
73.65
43.2

Associated Gene:

Gene:
PLD5
Ensembl Gene ID:
ENSAPLG00000015142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037359
39272308 - 39411447
139140
ENSAPLT00000015784
39271573 - 39411447
139875
ENSAPLT00000015780
39264361 - 39411447
147087