Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39374604_39398527_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39374604 - 39398527

Intron Length:

23924

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTTAATTTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAT

U12 Branch Point Sequence:

GAACCTTTAATT

Flanking Amino Acid:

ASLDWRSLGQMKELGVIVYN

Intron Amino Acid Position:

219

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

82.1

25.8

Major BPS

0.75

78.6

Major PPT

81.8

0.71

0.9

76.2

37.4

Minor 5ss

39.6

-1.2

2.8

49.5

46.6

Minor BPS

66.3

0.59

1.2

72.58

Associated Gene:

Gene:

PLD5

Ensembl Gene ID:

ENSAPLG00000015142

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037359

39272308 - 39411447

139140

ENSAPLT00000015784

39271573 - 39411447

139875

ENSAPLT00000015780

39264361 - 39411447

147087