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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39398726_39402656_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39398726 - 39402656
Intron Length:
3931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGCCTTCACA
Flanking Amino Acid:
NETKSEAFVSNSPKLFCPKD
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
81.8
32.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.9
0.72
0.8
76.1
32.5
Minor 5ss
43.3
-0.7
2.8
60.6
43.7
Minor BPS
70.9
0.65
1.8
83.03
38.2

Associated Gene:

Gene:
PLD5
Ensembl Gene ID:
ENSAPLG00000015142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037359
39272308 - 39411447
139140
ENSAPLT00000015784
39271573 - 39411447
139875
ENSAPLT00000015780
39264361 - 39411447
147087