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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39402797_39404802_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39402797 - 39404802
Intron Length:
2006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTATATGAACA
Flanking Amino Acid:
LPIVIDTNAKRYWPYLDGKI
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.1
33.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.8
0.78
0.7
80
25.5
Minor 5ss
32.3
-2
3.3
44.3
43.6
Minor BPS
51.9
0.06
1.8
67.22
38.3

Associated Gene:

Gene:
PLD5
Ensembl Gene ID:
ENSAPLG00000015142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037359
39272308 - 39411447
139140
ENSAPLT00000015784
39271573 - 39411447
139875
ENSAPLT00000015780
39264361 - 39411447
147087