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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39409215_39411211_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39409215 - 39411211
Intron Length:
1997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTACTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTGCCTTTACTT
Flanking Amino Acid:
YMVTDGAAYIGNFDWVGNAF
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.1
0.65
0.8
73.8
30
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
54.6
0.22
1.6
68.43
43.4

Associated Gene:

Gene:
PLD5
Ensembl Gene ID:
ENSAPLG00000015142
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037359
39272308 - 39411447
139140
ENSAPLT00000015784
39271573 - 39411447
139875
ENSAPLT00000015780
39264361 - 39411447
147087