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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39448333_39450145_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
39448333 - 39450145
Intron Length:
1813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTGTATTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.1
0.66
1
83.5
30.7
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
70.3
0.72
1.7
88.65
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030016
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035876
39448077 - 39453507
5431