Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39451363_39452127_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39451363 - 39452127

Intron Length:

765

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACACAT

5'SS Class:

major

3'SS Sequence:

TCTCTTGTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTAAA

U12 Branch Point Sequence:

CTCACTTTCACC

Flanking Amino Acid:

LATHQDEISKFLNKADFPSK

Intron Amino Acid Position:

317

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

1.1

71.6

40.1

Major BPS

67.4

0.43

1.1

67.9

36.3

Major PPT

85.7

0.8

83.9

31.1

Minor 5ss

39.2

-1.2

3.2

56.5

47.6

Minor BPS

52.7

0.07

1.8

62.15

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030016

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035876

39448077 - 39453507

5431

ENSAPLT00000026405

39449261 - 39453507

4247