Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39452320_39453261_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39452320 - 39453261

Intron Length:

942

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACCACC

5'SS Class:

major

3'SS Sequence:

CCTTTTTGTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATCAA

U12 Branch Point Sequence:

ATGTATGTATAT

Flanking Amino Acid:

SDRASTFKWKQHTLSPEPVL

Intron Amino Acid Position:

381

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

1.2

69.7

41.3

Major BPS

62.4

0.31

32.1

Major PPT

84.3

0.77

0.8

83.6

31.4

Minor 5ss

46.2

-0.4

2.6

61.9

42.5

Minor BPS

40.9

-0.6

2.3

60.17

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030016

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035876

39448077 - 39453507

5431

ENSAPLT00000026405

39449261 - 39453507

4247