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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39460395_39467295_R

Intron Information:

Intron Rank:
133311
Intron Class:
major
Intron Phase:
Intron Coordinates:
39460395 - 39467295
Intron Length:
6901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTGA
5'SS Class:
major
3'SS Sequence:
TTTGTACCTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GTTTTTGTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59.6
41.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
69.5
0.44
1.1
68.8
36.7
Minor 5ss
35.1
-1.7
3.4
47.8
47.7
Minor BPS
49.3
0.03
2.2
75.46
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018968
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023014
39460112 - 39467443
7332