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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39475281_39475397_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39475281 - 39475397
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
CTGATTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTCTGATTAAAA
Flanking Amino Acid:
IRAKFPTKIPVIVERYQKEK
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
68.2
43
Major BPS
79
0.72
1
69
38.9
Major PPT
60.7
0.24
1.1
55.7
42.6
Minor 5ss
35.8
-1.6
3.5
51.7
45
Minor BPS
47.9
-0.1
2.1
61.42
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023202
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044704
39475087 - 39476597
1511