About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39511278_39512423_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39511278 - 39512423
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTGGAT
U12 Branch Point Sequence:
TTTTTTTGCACA
Flanking Amino Acid:
SELWKNFQFKRDYEKLPSCK
Intron Amino Acid Position:
762

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
50.1
0
1.4
51.1
44.3
Major PPT
86.2
0.82
0.8
83.5
31.6
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
56.5
0.2
1.9
75.34
36.3

Associated Gene:

Gene:
EXO1
Ensembl Gene ID:
ENSAPLG00000015042
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015676
39510930 - 39529163
18234