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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39512618_39516498_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
39512618 - 39516498
Intron Length:
3881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
AAAAATCTCACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATAACTTAATA
Flanking Amino Acid:
DRKNTVAKIKVPGLHKSSSV
Intron Amino Acid Position:
698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
100
1.24
0.5
100
0
Major PPT
59.9
0.22
1
50.7
42.5
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
67.6
0.55
1.5
74.8
36.1

Associated Gene:

Gene:
EXO1
Ensembl Gene ID:
ENSAPLG00000015042
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015676
39510930 - 39529163
18234