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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39519029_39520048_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39519029 - 39520048
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AAATTGTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGATTCTTAAAT
Flanking Amino Acid:
KELLTKRRRSDLEELSDGDL
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
67.2
0.39
1
63.5
42.9
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
73.1
0.8
1.3
82.96
37.4

Associated Gene:

Gene:
EXO1
Ensembl Gene ID:
ENSAPLG00000015042
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015676
39510930 - 39529163
18234