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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39520266_39522054_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39520266 - 39522054
Intron Length:
1789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TATTTCTGACTT
Flanking Amino Acid:
IDNYNPDTAQPMQQRSRDWN
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.4
38.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
88.8
0.87
0.7
85.4
28.5
Minor 5ss
34
-1.8
3.3
49.1
46.6
Minor BPS
58.6
0.35
1.7
77.52
39.1

Associated Gene:

Gene:
EXO1
Ensembl Gene ID:
ENSAPLG00000015042
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015676
39510930 - 39529163
18234