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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_39523080_39524681_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39523080 - 39524681
Intron Length:
1602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTTG
5'SS Class:
major
3'SS Sequence:
GTTTTTTGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTTAA
U12 Branch Point Sequence:
GTTTTTTGGACA
Flanking Amino Acid:
KLANNPDIIKVIKKMGHYLK
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.6
40.9
Major BPS
52
0.05
1.2
45
38.3
Major PPT
74.4
0.55
1.1
72.2
42.7
Minor 5ss
47.5
-0.2
2.8
64.6
46.7
Minor BPS
60.5
0.32
1.4
71.12
34.6

Associated Gene:

Gene:
EXO1
Ensembl Gene ID:
ENSAPLG00000015042
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015676
39510930 - 39529163
18234